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Publications

Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells.

Parker R. et al, (2021), Cell reports, 35

Incoming HIV virion-derived Gag Spacer Peptide 2 (p1) is a target of effective CD8+ T cell antiviral responses.

Yang H. et al, (2021), Cell reports, 35

Integral Use of Immunopeptidomics and Immunoinformatics for the Characterization of Antigen Presentation and Rational Identification of BoLA-DR-Presented Peptides and Epitopes.

Fisch A. et al, (2021), Journal of immunology (Baltimore, Md. : 1950)

HLA binding of self-peptides is biased towards proteins with specific molecular functions

Karnaukhov V. et al, (2021)

Reply.

Powell Doherty RD. et al, (2021), Gastroenterology, 160, 471 - 472

Identification of antigens presented by MHC for vaccines against tuberculosis

Bettencourt P. et al, (2020), npj Vaccines, 5

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire.

Nicastri A. et al, (2020), Proteomics, 20

Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers.

Saini SK. et al, (2020), Nature communications, 11

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire (vol 20, 1900401, 2020)

Nicastri A. et al, (2020), PROTEOMICS

Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells

Parker R. et al, (2020)

In-depth mining of the immunopeptidome of an acute myeloid leukemia cell line using complementary ligand enrichment and data acquisition strategies

Pandey K. et al, (2020), Molecular Immunology, 123, 7 - 17

The Choice of HLA-Associated Peptide Enrichment and Purification Strategy Affects Peptide Yields and Creates a Bias in Detected Sequence Repertoire.

Nicastri A. et al, (2020), Proteomics

Identification of an Unconventional Subpeptidome Bound to the Behçet's Disease-associated HLA-B*51:01 that is Regulated by Endoplasmic Reticulum Aminopeptidase 1 (ERAP1).

Chen L. et al, (2020), Molecular & cellular proteomics : MCP, 19, 871 - 883

Extended Analysis Identifies Drug-Specific Association of Two Distinct HLA Class II Haplotypes for Development of Immunogenicity to Adalimumab and Infliximab.

Powell Doherty RD. et al, (2020), Gastroenterology

NNAlign_MA; MHC peptidome deconvolution for accurate MHC binding motif characterization and improved T cell epitope predictions.

Alvarez B. et al, (2019), Molecular & cellular proteomics : MCP

LTR retroelement expansion of the human cancer transcriptome and immunopeptidome revealed by de novo transcript assembly.

Attig J. et al, (2019), Genome research, 29, 1578 - 1590

Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics

Purcell AW. et al, (2019), Nature Protocols, 14, 1687 - 1707

NOD2 and TLR2 Signal via TBK1 and PI31 to Direct Cross-Presentation and CD8T Cell Responses

Corridoni D. et al, (2019), FRONTIERS IN IMMUNOLOGY, 10

MS-Rescue: A Computational Pipeline to Increase the Quality and Yield of Immunopeptidomics Experiments.

Andreatta M. et al, (2019), Proteomics, 19, e1800357 - e1800357

Targeting Mutated Plus Germline Epitopes Confers Pre-clinical Efficacy of an Instantly Formulated Cancer Nano-Vaccine.

Mohsen MO. et al, (2019), Front Immunol, 10

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